Difference between revisions of "Run GLM demo"
From Age of Water
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For '''windows, OSX, or Linux''' use use the following command in R: | For '''windows, OSX, or Linux''' use use the following command in R: | ||
<code><pre> install.packages("glmtools", | <code><pre> install.packages("glmtools", | ||
| − | repos = c("http://gleon.github. | + | repos = c("http://gleon.github.io/", "http://cran.us.r-project.org"), |
dependencies = TRUE, | dependencies = TRUE, | ||
type = "both")</pre></code> | type = "both")</pre></code> | ||
You now have GLM (<code>GLMr</code>), R tools for GLM (<code>glmtools</code>), NetCDF file handlers (<code>ncdf</code>), and <code>rLakeAnalyzer</code> installed!! | You now have GLM (<code>GLMr</code>), R tools for GLM (<code>glmtools</code>), NetCDF file handlers (<code>ncdf</code>), and <code>rLakeAnalyzer</code> installed!! | ||
| + | |||
| + | If you installed glmtools a while ago, it would be best to update it: | ||
| + | <code><pre> update.packages(repos = "http://gleon.github.io/", | ||
| + | type = "source")</pre></code> | ||
===Run GLM demo=== | ===Run GLM demo=== | ||
| Line 17: | Line 21: | ||
If you get a success message, your task is complete! | If you get a success message, your task is complete! | ||
| + | |||
| + | ===Troubleshooting=== | ||
| + | Only supported for OSX 10.9 (Mavericks) and newer. | ||
| + | |||
| + | Package has been updated, so the following should not arise. | ||
| + | Mac Users: If you get a 'permission denied error' when running demo(glm), you must change the permission setting on the sim folder in terminal. | ||
| + | <br>Example error: | ||
| + | <code><pre> sh: /Library/Frameworks/R.framework/Versions/3.0/Resources/library/GLMr/extbin/macGLM/bin/glm: Permission denied </pre></code> | ||
| + | |||
| + | '''Steps''' | ||
| + | * Open TERMINAL | ||
| + | * Change directory folder to that listed in the error. (copy bold text, and change to match your personal file path) | ||
| + | example: | ||
| + | ''MyLovley-MacBook-Pro:~ user$'' '''cd /Library/Frameworks/R.framework/Versions/3.0/Resources/library/GLMr/extbin/macGLM/bin''' | ||
| + | ** If you type '''ls''', you should see 10 files, one of which is titled 'glm' | ||
| + | * Type | ||
| + | <code><pre> chmod 755 glm </pre></code> | ||
| + | * You should now be able to run demo(glm) | ||
| + | |||
| + | |||
<!-- Do NOT Edit below this Line --> | <!-- Do NOT Edit below this Line --> | ||
{{#set: | {{#set: | ||
Owner=Jordan_Read| | Owner=Jordan_Read| | ||
| + | Progress=100| | ||
StartDate=2014-10-18| | StartDate=2014-10-18| | ||
TargetDate=2014-10-24| | TargetDate=2014-10-24| | ||
Type=Low}} | Type=Low}} | ||
Latest revision as of 14:16, 26 October 2014
Installing required packages
For windows, OSX, or Linux use use the following command in R:
install.packages("glmtools",
repos = c("http://gleon.github.io/", "http://cran.us.r-project.org"),
dependencies = TRUE,
type = "both")You now have GLM (GLMr), R tools for GLM (glmtools), NetCDF file handlers (ncdf), and rLakeAnalyzer installed!!
If you installed glmtools a while ago, it would be best to update it:
update.packages(repos = "http://gleon.github.io/",
type = "source")Run GLM demo
library(GLMr)
demo(glm)
If you get a success message, your task is complete!
Troubleshooting
Only supported for OSX 10.9 (Mavericks) and newer.
Package has been updated, so the following should not arise.
Mac Users: If you get a 'permission denied error' when running demo(glm), you must change the permission setting on the sim folder in terminal.
Example error:
sh: /Library/Frameworks/R.framework/Versions/3.0/Resources/library/GLMr/extbin/macGLM/bin/glm: Permission denied
Steps
- Open TERMINAL
- Change directory folder to that listed in the error. (copy bold text, and change to match your personal file path)
example: MyLovley-MacBook-Pro:~ user$ cd /Library/Frameworks/R.framework/Versions/3.0/Resources/library/GLMr/extbin/macGLM/bin
- If you type ls, you should see 10 files, one of which is titled 'glm'
- Type
chmod 755 glm
- You should now be able to run demo(glm)
