Difference between revisions of "Run GLM demo"
From Age of Water
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m (→Installing required packages: simpler install instructions) |
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For '''windows, OSX, or Linux''' use use the following command in R: | For '''windows, OSX, or Linux''' use use the following command in R: | ||
<code><pre> install.packages("glmtools", | <code><pre> install.packages("glmtools", | ||
| − | repos = c("http://gleon.github. | + | repos = c("http://gleon.github.io/", "http://cran.us.r-project.org"), |
dependencies = TRUE, | dependencies = TRUE, | ||
type = "both")</pre></code> | type = "both")</pre></code> | ||
Revision as of 14:13, 26 October 2014
Installing required packages
For windows, OSX, or Linux use use the following command in R:
install.packages("glmtools",
repos = c("http://gleon.github.io/", "http://cran.us.r-project.org"),
dependencies = TRUE,
type = "both")You now have GLM (GLMr), R tools for GLM (glmtools), NetCDF file handlers (ncdf), and rLakeAnalyzer installed!!
Run GLM demo
library(GLMr)
demo(glm)
If you get a success message, your task is complete!
Troubleshooting
Only supported for OSX 10.9 (Mavericks) and newer.
Package has been updated, so the following should not arise.
Mac Users: If you get a 'permission denied error' when running demo(glm), you must change the permission setting on the sim folder in terminal.
Example error:
sh: /Library/Frameworks/R.framework/Versions/3.0/Resources/library/GLMr/extbin/macGLM/bin/glm: Permission denied
Steps
- Open TERMINAL
- Change directory folder to that listed in the error. (copy bold text, and change to match your personal file path)
example: MyLovley-MacBook-Pro:~ user$ cd /Library/Frameworks/R.framework/Versions/3.0/Resources/library/GLMr/extbin/macGLM/bin
- If you type ls, you should see 10 files, one of which is titled 'glm'
- Type
chmod 755 glm
- You should now be able to run demo(glm)
